Package index
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bray() - Compute Bray-Curtis Dissimilarity from a Dense or Sparse Matrix.
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canberra() - Compute Canberra Dissimilarity from a from a Dense or Sparse Matrix.
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colormap() - Color map of a variable
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column_exists() - Checks if column exists in table
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composition_plot() - Compositional plot
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cosine() - Compute Cosine Dissimilarity from a Dense or Sparse Matrix.
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diversity() - Sparse implementation of Alpha Diversity Metrics
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diversity_plot() - Diversity plot
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euclidean() - Compute Euclidean Dissimilarity from a from a Dense or Sparse Matrix.
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hill_taxa() - Sparse implementation of Hill numbers
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jaccard() - Compute Jaccard Dissimilarity from a Dense or Sparse Matrix.
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jsd() - Compute Jensen-Shannon Divergence from a Dense or Sparse Matrix.
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manhattan() - Compute Manhattan Dissimilarity from a Dense or Sparse Matrix.
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matrix_to_dtable() - Converting a Matrix to data.table
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metagenomics - Sub-class metagenomics
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omics - Abstract omics class
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ordination_plot() - Ordination plot
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pairwise_adonis() - Pairwise adonis2 (PERMANOVA) computation
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pairwise_anosim() - Pairwise anosim (ANOSIM) computation
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plot_pairwise_stats() - Create pairwise stats plot
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proteomics - Sub-class proteomics
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unifrac() - Compute UniFrac Dissimilarity from a Dense or Sparse Matrix.
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volcano_plot() - Volcano plot